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How to Identify an Unknown GC/MS Peak and Estimate Its Concentration | MSD Data Analysis

Writer: Vineta Mills
Vineta Mills
Oct 29
1 min read

An unknown GC/MS peak becomes much more useful once you can determine what it may be and estimate how much is present.


In this video, I show how I work through an unknown peak in MSD data.


I cover:


• Selecting the unknown chromatographic peak

• Reviewing the mass spectrum

• Using a library search for tentative identification

• Evaluating the library match

• Comparing the unknown response to a known compound

• Estimating the unknown compound concentration from the response


Library searching can provide a tentative identification, but the match should still be evaluated together with the rest of the analytical evidence.


I also show a practical way to estimate concentration when the unknown is not part of the original target list.


Vineta Mills Consulting

Practical GC and GC/MS maintenance, troubleshooting, chromatography, software, method development, and laboratory training.



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